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Following the passage of a tropical cyclone (TC) the changes in temperature, salinity, nutrient concentration, water clarity, pigments and phytoplankton taxa were assessed at 42 stations from eight sites ranging from the open ocean, through the coastal zone and into estuaries. The impacts of the TC were estimated relative to the long-term average (LTA) conditions as well as before and after the TC. Over all sites the most consistent environmental impacts associated with TCs were an average 41% increase in turbidity, a 13% decline in salinity and a 2% decline in temperature relative to the LTA. In the open ocean, the nutrient concentrations, cyanobacteria and picoeukaryote abundances increased at depths between 100 and 150 m for up to 3 months following a TC. While at the riverine end of coastal estuaries, the predominate short-term response was a strong decline in salinity and phytoplankton suggesting these impacts were initially dominated by advection. The more intermediate coastal water-bodies generally experienced declines in salinity, significant reductions in water clarity, plus significant increases in nutrient concentrations and phytoplankton abundance. These intermediate waters typically developed dinoflagellate, diatom or cryptophyte blooms that elevated phytoplankton biomass for 1–3 months following a TC.

 

Harmful algal blooms (HABs) caused by the toxin-producing cyanobacteria Microcystis spp., can increase water column pH. While the effect(s) of these basified conditions on the bloom formers are a high research priority, how these pH shifts affect other biota remains understudied. Recently, it was shown these high pH levels decrease growth and Si deposition rates in the freshwater diatom Fragilaria crotonensis and natural Lake Erie (Canada-US) diatom populations. However, the physiological mechanisms and transcriptional responses of diatoms associated with these observations remain to be documented. Here, we examined F. crotonensis with a set of morphological, physiological, and transcriptomic tools to identify cellular responses to high pH. We suggest 2 potential mechanisms that may contribute to morphological and physiological pH effects observed in F. crotonensis . Moreover, we identified a significant upregulation of mobile genetic elements in the F. crotonensis genome which appear to be an extreme transcriptional response to this abiotic stress to enhance cellular evolution rates–a process we have termed “ genomic roulette. ” We discuss the ecological and biogeochemical effects high pH conditions impose on fresh waters and suggest a means by which freshwater diatoms such as F. crotonensis may evade high pH stress to survive in a “basified” future. 

In estuaries, local processes such as changing material loads from the watershed and complex circulation create dynamic environments with respect to ecosystem metabolism and carbonate chemistry that can strongly modulate impacts of global atmospheric CO₂increases on estuarine pH. Long‐term (> 20 yr) surface water pH records from the USA's two largest estuaries, Chesapeake Bay (CB) and Neuse River Estuary‐Pamlico Sound (NRE‐PS) were examined to understand the relative importance of atmospheric forcing vs. local processes in controlling pH. At the estuaries’ heads, pH increases in CB and decreases in NRE‐PS were driven primarily by changing ratios of river alkalinity to dissolved inorganic carbon concentrations. In upper reaches of CB and middle reaches of the NRE‐PS, pH increases were associated with increases in phytoplankton biomass. There was no significant pH change in the lower NRE‐PS and only the polyhaline CB showed a pH decline consistent with ocean acidification. In both estuaries, interannual pH variability showed robust, positive correlations with chlorophylla(Chla) during the spring in mid to lower estuarine regions indicative of strong control by net phytoplankton production. During summer and fall, Chlaand pH negatively correlated in lower regions of both estuaries, given a shift toward heterotrophy driven by changes in phytoplankton community structure and increases in the load ratio of dissolved inorganic nitrogen to organic carbon. Tropical cyclones episodically depressed pH due to vertical mixing of CO₂rich bottom waters and post‐storm terrestrial organic matter loading. Local processes we highlight represent a significant challenge for predicting future estuarine pH.